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Cosmic medallion portrait of PILOT_grls680CAS33, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grls680CAS33

PILOT_grls680CAS33 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grls680CAS33 in the atlas
About PILOT_grls680CAS33

PILOT_grls680CAS33 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PILOT_grls680CAS33's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grls680CAS33's. Click any of them to keep exploring.

  1. Oldies_grlse5e88610 Golden Retriever 31.67
  2. GRLS_grlsUCGVETQQ Golden Retriever 31.85
  3. GRLS_grls6VLBU9TT Golden Retriever 32.24
  4. GRLS_grlsDA01X5MM Golden Retriever 32.55
  5. GRLS_grlsBBNS48MM Golden Retriever 32.72
PILOT_grls680CAS33's breed

PILOT_grls680CAS33 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 85%
  2. Labrador Retriever 16%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.909
y 9.803
z 9.154
PCA-256 distance from breed centroid
29.70
Outlier percentile in breed
24
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grls680CAS33 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC114 z = 3.36
  • chr4:80,039,364 loading 0.0307
  • chr8:13,133,148 loading -0.0301
  • chr31:11,367,367 loading 0.0289
PC79 z = -3.02
  • chr3:7,389,779 loading 0.0444
  • chr3:6,720,531 loading -0.0378
  • chr3:6,392,552 loading -0.0378
PC126 z = 2.57
  • chr21:31,645,739 loading 0.0387
  • chr21:34,014,573 loading -0.0385
  • chr26:6,573,837 loading 0.0382
Ancestry reconstruction error: 0.55
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