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Cosmic medallion portrait of PILOT_grls6AN705JJ, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grls6AN705JJ

PILOT_grls6AN705JJ is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grls6AN705JJ in the atlas
About PILOT_grls6AN705JJ

PILOT_grls6AN705JJ sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PILOT_grls6AN705JJ's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grls6AN705JJ's. Click any of them to keep exploring.

  1. GRLS_grlsQVYRH955 Golden Retriever 31.48
  2. GRLS_grls7K7O3OJJ Golden Retriever 33.12
  3. GRLS_grlsR2FVJBB Golden Retriever 33.27
  4. GRLS_grlsNJ3YMTMM Golden Retriever 34.28
  5. GRLS_grlsRWMZKSJJ Golden Retriever 34.72
PILOT_grls6AN705JJ's breed

PILOT_grls6AN705JJ sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.186
y 9.743
z 9.142
PCA-256 distance from breed centroid
32.91
Outlier percentile in breed
42
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grls6AN705JJ scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC198 z = -2.83
  • chr2:48,735,597 loading 0.0380
  • chr23:1,924,139 loading -0.0317
  • chr23:1,615,600 loading -0.0317
PC205 z = -2.68
  • chr28:15,673,727 loading 0.0386
  • chr7:26,386,959 loading -0.0358
  • chr7:26,293,949 loading -0.0338
PC138 z = 2.46
  • chr15:23,130,452 loading 0.0401
  • chr28:1,724,663 loading 0.0367
  • chr15:42,263,341 loading 0.0350
Ancestry reconstruction error: 0.54
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