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Cosmic medallion portrait of PILOT_grlsL7EU8JJJ, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grlsL7EU8JJJ

PILOT_grlsL7EU8JJJ is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grlsL7EU8JJJ in the atlas
About PILOT_grlsL7EU8JJJ

PILOT_grlsL7EU8JJJ is a strong genetic outlier within the Golden Retriever cluster - among the most distinctive examples of their breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PILOT_grlsL7EU8JJJ's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grlsL7EU8JJJ's. Click any of them to keep exploring.

  1. GRLS_grlsZNKR2HEE Golden Retriever 30.93
  2. GRLS_grlsZKOGW2AA Golden Retriever 35.64
  3. GRLS_grlsYH2JVNN Golden Retriever 35.98
  4. GRLS_grls9L20RMHH Golden Retriever 36.65
  5. GRLS_grlsKV1Y6SOO Golden Retriever 37.13
PILOT_grlsL7EU8JJJ's breed

PILOT_grlsL7EU8JJJ sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 83%
  2. Labrador Retriever 17%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.661
y 10.403
z 9.225
PCA-256 distance from breed centroid
47.36
Outlier percentile in breed
95
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsL7EU8JJJ scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC49 z = 4.27
  • chr22:1,808,281 loading 0.0358
  • chr1:70,511,608 loading 0.0354
  • chr22:2,157,682 loading 0.0341
PC53 z = -4.24
  • chr1:72,254,803 loading 0.0346
  • chr1:70,825,780 loading 0.0344
  • chr14:9,177,180 loading 0.0335
PC117 z = -3.98
  • chr1:102,829,549 loading 0.0371
  • chr8:40,351,665 loading 0.0356
  • chr1:70,953,125 loading 0.0339
Ancestry reconstruction error: 0.66
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