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Cosmic medallion portrait of PILOT_grlsQOZ5CYTT, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grlsQOZ5CYTT

PILOT_grlsQOZ5CYTT is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grlsQOZ5CYTT in the atlas
About PILOT_grlsQOZ5CYTT

PILOT_grlsQOZ5CYTT sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PILOT_grlsQOZ5CYTT's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grlsQOZ5CYTT's. Click any of them to keep exploring.

  1. GRLS_grlsZEZIUU99 Golden Retriever 24.34
  2. GRLS_grlsZ11BDK33 Golden Retriever 29.66
  3. GRLS_grlsO3II22II Golden Retriever 31.30
  4. GRLS_grls405NWMQQ Golden Retriever 31.77
  5. GRLS_grlsWK6TLZ88 Golden Retriever 31.86
PILOT_grlsQOZ5CYTT's breed

PILOT_grlsQOZ5CYTT sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 10.308
y 10.033
z 8.939
PCA-256 distance from breed centroid
38.87
Outlier percentile in breed
71
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsQOZ5CYTT scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC146 z = 3.82
  • chr2:41,835,446 loading 0.0357
  • chr2:40,086,289 loading 0.0341
  • chr22:28,657,814 loading -0.0335
PC223 z = 3.02
  • chr7:43,046,169 loading 0.0391
  • chr13:1,840,654 loading 0.0338
  • chr22:3,486,881 loading -0.0327
PC113 z = 2.89
  • chr22:17,237,143 loading 0.0474
  • chr22:17,327,096 loading 0.0458
  • chr1:53,531,199 loading 0.0436
Ancestry reconstruction error: 0.61
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