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CanVAS Chen · Founder
Cosmic medallion portrait of W_GRe_GRe_GT225, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

W_GRe_GRe_GT225

W_GRe_GRe_GT225 is a Golden Retriever from the Chen research cohort. One of 14,478 dogs who built the atlas.

See W_GRe_GRe_GT225 in the atlas
About W_GRe_GRe_GT225

W_GRe_GRe_GT225 is a notable Golden Retriever - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
W_GRe_GRe_GT225's nearest neighbors

The five dogs in the atlas whose genomes sit closest to W_GRe_GRe_GT225's. Click any of them to keep exploring.

  1. GRe_GT225_GRe_GT225 Golden Retriever 4.37
  2. GRLS_grlsMDNH1OCC Golden Retriever 31.86
  3. GRLS_grlsYMC2WERR Golden Retriever 33.15
  4. GRLS_grls9HFQFSEE Golden Retriever 33.34
  5. Oldies_grls3f215227 Golden Retriever 35.50
W_GRe_GRe_GT225's breed

W_GRe_GRe_GT225 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 70%
  2. Labrador Retriever 30%
Source

From the CanVAS (Chen cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.582
y 9.207
z 8.964
PCA-256 distance from breed centroid
41.62
Outlier percentile in breed
83
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which W_GRe_GRe_GT225 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC77 z = -5.26
  • chr23:13,507,176 loading 0.0356
  • chr6:36,116,228 loading 0.0355
  • chr23:14,586,660 loading 0.0337
PC73 z = 3.92
  • chr7:44,608,561 loading 0.0331
  • chr11:69,439,722 loading 0.0324
  • chr1:66,792,676 loading 0.0313
PC247 z = -3.30
  • chr3:7,959,527 loading 0.0294
  • chr16:43,038,278 loading -0.0293
  • chr19:17,213,086 loading 0.0288
Ancestry reconstruction error: 0.64
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