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CanVAS Chen · Founder
Cosmic medallion portrait of C_CDH_C_CDH2, a Chongqing Dog
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

C_CDH_C_CDH2

C_CDH_C_CDH2 is a Chongqing Dog from the Chen research cohort. One of 14,478 dogs who built the atlas.

See C_CDH_C_CDH2 in the atlas
About C_CDH_C_CDH2

C_CDH_C_CDH2 sits at the edge of the Chongqing Dog cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
C_CDH_C_CDH2's nearest neighbors

The five dogs in the atlas whose genomes sit closest to C_CDH_C_CDH2's. Click any of them to keep exploring.

  1. C_CDH_C_CDH4 Chongqing Dog 9.47
  2. C_CDH_C_CDH8 Chongqing Dog 14.24
  3. C_CDH_C_CDH10 Chongqing Dog 14.41
  4. C_CDH_C_CDH3 Chongqing Dog 15.23
  5. C_CDH_C_CDH5 Chongqing Dog 15.26
C_CDH_C_CDH2's breed

C_CDH_C_CDH2 sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 100%
Source

From the CanVAS (Chen cohort) . Breed-page reference: Chongqing Dog.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.605
y 5.960
z -6.392
PCA-256 distance from breed centroid
11.00
Outlier percentile in breed
67
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which C_CDH_C_CDH2 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC201 z = 5.19
  • chr28:5,497,677 loading 0.0416
  • chr28:5,428,661 loading 0.0337
  • chr20:7,134,018 loading 0.0323
PC225 z = -5.14
  • chr23:37,382,588 loading 0.0307
  • chr7:21,991,064 loading -0.0305
  • chr6:50,176,215 loading 0.0304
PC235 z = -4.70
  • chr5:7,618,997 loading 0.0371
  • chr18:10,714,022 loading 0.0318
  • chr25:27,400,046 loading 0.0312
Ancestry reconstruction error: 0.67
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