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Brachycephaly

BMP3

chr32:34,766,704-34,793,266 ·

short-face candidate

Atlas-wide
66%
dog-weighted average
Breeds with data
205
of 215
Dogs contributing
13,813
CanVAS Atlas
What the frequency means

BMP3 chr32. Brachycephaly candidate (Schoenebeck 2012).

High frequency means

allele common in non-brachy breeds

Low frequency means

allele common in brachycephalic breeds

Frequency landscape

Where the brachycephaly variant sits across every breed with data, by and grouped by . Each tick is one breed; a variant fixed in one group and absent in another shows up as a gap. These come from one marker per trait, so read them as a : accurate for most breeds, with real exceptions.

0%50%100%
mixed_unknown3 breeds · mean 78%
toy18 breeds · mean 77%
working21 breeds · mean 75%
non_sporting21 breeds · mean 73%
sporting18 breeds · mean 72%
hound20 breeds · mean 72%
terrier18 breeds · mean 71%
other14 breeds · mean 70%
herding17 breeds · mean 67%
ancient_landrace55 breeds · mean 66%
n = 13,813 dogs · CanVAS Atlas (Brundage et al. 2026) · Sniff Atlas
Allele frequency across 205 breeds with data, grouped by AKC breed group. Each accent tick is one breed (fainter = fewer dogs sampled); the bone marker is the group mean. Frequencies are population-level.
Top 10 breeds, highest frequency
  1. 100% n=62
  2. Saint Bernard working
    100% n=37
  3. Boston Terrier non_sporting
    100% n=31
  4. Bullmastiff working
    100% n=31
  5. Pug toy
    100% n=31
  6. Pekingese toy
    100% n=26
  7. 100% n=24
  8. 100% n=20
  9. Samoyed working
    100% n=20
  10. Dingo West ancient_landrace
    100% n=132
Bottom 10 breeds, lowest frequency
  1. 2% n=21
  2. 10% n=21
  3. Village Dog South Africa 1 ancient_landrace
    11% n=22
  4. Feral Dog Chernobyl ancient_landrace
    12% n=153
  5. Feral Dog Capeyork ancient_landrace
    14% n=130
  6. Village Dog Kazakhstan ancient_landrace
    15% n=20
  7. Village Dog Armenia ancient_landrace
    18% n=25
  8. Village Dog Ukraine ancient_landrace
    22% n=49
  9. Borzoi hound
    25% n=22
  10. Rottweiler working
    28% n=183

98 breeds with fewer than 20 genotyped dogs are not ranked here. At that sample size a single dog swings the frequency, so the figure is not yet stable enough to compare.

Methodology

Frequency is measured at the typed-backbone 32:33567432 on chr32, 34.8 Mb (9 kb from the gene body). Alleles C/T. Coordinates from ensembl symbol UU Cfam GSD 1.0. Per-breed frequencies are computed across all CanVAS dogs labelled with that breed (missing genotypes excluded).

In the reference databases

BMP3 as it is catalogued across the genomics world. Each link is the canonical record, so this gene composes with everything those resources know.

The human counterpart

In humans, this gene's counterpart is BMP3. That ortholog is what connects BMP3 to a century of human medical genetics. The dog and human proteins are 85% identical.

In people, BMP3 appears tolerant of loss-of-function variation (gnomAD v4.1 constraint, LOEUF 0.83). Constraint measures intolerance to loss-of-function only and does not indicate importance; some tolerant genes cause disease through other mechanisms.

How to cite this page

The per-breed allele frequencies on this page are derived from the open Sniff Atlas v1.0.1 (Gehring 2026, doi:10.5281/zenodo.20566358, CC-BY 4.0). The underlying genotype substrate is CanVAS (Brundage 2026, doi:10.64898/2026.04.13.718238), and disease associations are grounded in OMIA. Full citation formats including BibTeX, RIS, and CITATION.cff at sniff.world/cite.

Last updated
Sources: Sniff Atlas v1.0.1 (doi:10.5281/zenodo.20566358) · CanVAS (Brundage 2026) · OMIA · Dog10K (Meadows 2023) · gnomAD v4.1 (Karczewski 2020)