CanVAS Chen · Founder

C_HTM_C_HTM6

C_HTM_C_HTM6 is a Hequ Tibetan Mastiff from the Chen research cohort. One of 14,478 dogs who built the atlas.

About this name and portrait

I'm sure you probably guessed by now. These aren't real pictures of these dogs. And these aren't their real names.

But these dogs were real. They were alive. They were loved. We thought they deserved more than a subject ID to be remembered by. The portraits are built from each dog's actual genome, so we tried to get it close. But it's not enough.

We want to see your dog's face. We want to celebrate them by the name they were loved by. We want to look back and say 'oh yeah, Bosco? The Dachshund-Corgi mix? I remember him, his FGF4 variant was wild, those little legs could hold a small house.'

These dogs gave something most people don't realize. The Heroes in the Golden Retriever Lifetime Study showed up for blood draws, health surveys, fur and nail samples, every single year. Some of them for 14 years. Their data has taught us about lymphoma, hemangiosarcoma, and aging in ways that help not just dogs but potentially humans. And they didn't ask for any of it.

Morris Animal Foundation calls them Heroes. We agree.

If your dog was part of any of these studies, we want to give you their page. Their real name. Their real photo. The recognition they earned.

Email [email protected].

About C_HTM_C_HTM6

Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
Standard leg length. No chondrodysplasia retrogene variant.
Smooth coat. No wire-furnishings variant at RSPO2.

C_HTM_C_HTM6's nearest neighbors

The five dogs in the atlas whose genomes sit closest to C_HTM_C_HTM6's. Click any of them to keep exploring.

C_HTM_C_HTM6's breed

C_HTM_C_HTM6 sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

Golden Retriever 100%

Source

From the CanVAS (Chen cohort) . Breed-page reference: Hequ Tibetan Mastiff.

Full genotype detail

click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size

IGF1	C/A
HMGA2	T/T
SMAD2	G/G
LCORL	G/G
STC2	A/A
ADAMTS17	G/A

Leg length

FGF4·CFA18	C/C
FGF4·CFA12	C/C

Coat

RSPO2	C/C
FGF5	T/C
KRT71	C/C
MC1R	T/T

Ear set

MSRB3

G/A

Skull shape

BMP3	T/T
SMOC2	G/G

Technical details

click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position

x 4.150
y 4.794
z 0.802

Top-3 principal components by |z|

The 3 PCs on which C_HTM_C_HTM6 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC11 z = 3.43

chr6:60,987,558 loading 0.0302
chr18:25,790,852 loading 0.0293
chr14:14,074,192 loading -0.0293

PC131 z = -3.12

chr12:40,003,687 loading 0.0371
chr34:1,655,411 loading -0.0356
chr12:4,421,359 loading -0.0347

PC221 z = -2.92

chr23:23,759,985 loading 0.0312
chr2:32,595,915 loading 0.0312
chr3:6,457,748 loading -0.0306

Ancestry reconstruction error: 0.46

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