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CanVAS Chen · Founder
Cosmic medallion portrait of C_LSH_C_LSH12, a Lhasa Apso Cn
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

C_LSH_C_LSH12

C_LSH_C_LSH12 is a Lhasa Apso Cn from the Chen research cohort. One of 14,478 dogs who built the atlas.

See C_LSH_C_LSH12 in the atlas
About C_LSH_C_LSH12

C_LSH_C_LSH12 is a strong genetic outlier within the Lhasa Apso Cn cluster - among the most distinctive examples of their breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Smooth coat. No wire-furnishings variant at RSPO2.
C_LSH_C_LSH12's nearest neighbors

The five dogs in the atlas whose genomes sit closest to C_LSH_C_LSH12's. Click any of them to keep exploring.

  1. C_LSH_C_LSH5 Lhasa Apso Cn 16.12
  2. C_LSH_C_LSH6 Lhasa Apso Cn 18.16
  3. C_QCH_C_QCH4 Qingchuan Hound 18.22
  4. C_QCH_C_QCH3 Qingchuan Hound 18.25
  5. C_QCH_C_QCH6 Qingchuan Hound 18.31
C_LSH_C_LSH12's breed

C_LSH_C_LSH12 sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 100%
Source

From the CanVAS (Chen cohort) . Breed-page reference: Lhasa Apso Cn.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/T
KRT71 C/C
MC1R T/T
Ear set
MSRB3 G/A
Skull shape
BMP3 T/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.826
y -4.616
z -4.270
PCA-256 distance from breed centroid
28.51
Outlier percentile in breed
100
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which C_LSH_C_LSH12 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC11 z = 3.98
  • chr6:60,987,558 loading 0.0302
  • chr18:25,790,852 loading 0.0293
  • chr14:14,074,192 loading -0.0293
PC115 z = 2.62
  • chr24:13,855,152 loading 0.0360
  • chr24:10,928,728 loading 0.0358
  • chr10:6,396,863 loading -0.0341
PC201 z = -2.61
  • chr28:5,497,677 loading 0.0416
  • chr28:5,428,661 loading 0.0337
  • chr20:7,134,018 loading 0.0323
Ancestry reconstruction error: 0.56
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