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CanVAS Chen · Founder
Cosmic medallion portrait of C_SXX_C_SXX11, a Shanxi Xigou
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

C_SXX_C_SXX11

C_SXX_C_SXX11 is a Shanxi Xigou from the Chen research cohort. One of 14,478 dogs who built the atlas.

See C_SXX_C_SXX11 in the atlas
About C_SXX_C_SXX11

C_SXX_C_SXX11 sits near the center of the Shanxi Xigou cluster - genetically very typical for the breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
C_SXX_C_SXX11's nearest neighbors

The five dogs in the atlas whose genomes sit closest to C_SXX_C_SXX11's. Click any of them to keep exploring.

  1. C_SXX_C_SXX7 Shanxi Xigou 12.57
  2. C_SXX_C_SXX10 Shanxi Xigou 13.93
  3. C_SXX_C_SXX9 Shanxi Xigou 13.95
  4. C_SXX_C_SXX8 Shanxi Xigou 14.70
  5. C_SXX_C_SXX3 Shanxi Xigou 14.83
C_SXX_C_SXX11's breed

C_SXX_C_SXX11 sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 100%
Source

From the CanVAS (Chen cohort) . Breed-page reference: Shanxi Xigou.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 G/G
LCORL A/A
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 12.110
y 6.148
z 0.032
PCA-256 distance from breed centroid
9.42
Outlier percentile in breed
8
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which C_SXX_C_SXX11 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC95 z = -10.95
  • chr22:27,265,197 loading 0.0431
  • chr5:72,529,391 loading 0.0328
  • chr10:5,349,288 loading 0.0317
PC93 z = -8.27
  • chr6:4,184,827 loading 0.0321
  • chr23:33,432,720 loading -0.0321
  • chr6:3,012,938 loading 0.0307
PC86 z = 7.82
  • chr22:2,473,315 loading 0.0460
  • chr22:2,231,766 loading 0.0451
  • chr22:2,271,992 loading 0.0447
Ancestry reconstruction error: 0.86
Back to the Atlas →