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Cosmic medallion portrait of GRLS_grls1N450WSS, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grls1N450WSS

GRLS_grls1N450WSS is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grls1N450WSS in the atlas
About GRLS_grls1N450WSS

GRLS_grls1N450WSS sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grls1N450WSS's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grls1N450WSS's. Click any of them to keep exploring.

  1. GRLS_grlsFD8LVQNN Golden Retriever 31.89
  2. GRLS_grls3SN3WPJJ Golden Retriever 32.72
  3. GRLS_grls0VWS5ZPP Golden Retriever 33.01
  4. PILOT_grlsFMNORXX Golden Retriever 33.53
  5. GRLS_grls4PEV98TT Golden Retriever 33.80
GRLS_grls1N450WSS's breed

GRLS_grls1N450WSS sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.275
y 9.905
z 7.987
PCA-256 distance from breed centroid
28.36
Outlier percentile in breed
16
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls1N450WSS scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC128 z = -3.15
  • chr28:1,724,663 loading 0.0466
  • chr28:1,967,976 loading -0.0397
  • chr28:2,486,426 loading -0.0376
PC110 z = 2.78
  • chr25:1,742,133 loading 0.0401
  • chr28:2,607,542 loading 0.0393
  • chr25:1,819,027 loading 0.0392
PC252 z = 2.46
  • chr19:30,132,204 loading 0.0320
  • chr25:21,796,415 loading -0.0316
  • chr3:5,565,848 loading 0.0303
Ancestry reconstruction error: 0.52
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