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Cosmic medallion portrait of GRLS_grls340LG1ZZ, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grls340LG1ZZ

GRLS_grls340LG1ZZ is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grls340LG1ZZ in the atlas
About GRLS_grls340LG1ZZ

GRLS_grls340LG1ZZ sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grls340LG1ZZ's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grls340LG1ZZ's. Click any of them to keep exploring.

  1. GRLS_grlsL5727MQQ Golden Retriever 22.78
  2. GRLS_grlsUBE49VBB Golden Retriever 29.36
  3. GRLS_grlsZF39RYXX Golden Retriever 32.31
  4. PILOT_grlsCOEDU1TT Golden Retriever 32.89
  5. PILOT_grlsFIQS65WW Golden Retriever 33.66
GRLS_grls340LG1ZZ's breed

GRLS_grls340LG1ZZ sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/T
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.909
y 10.050
z 8.250
PCA-256 distance from breed centroid
31.12
Outlier percentile in breed
33
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls340LG1ZZ scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC137 z = 2.58
  • chr22:28,989,668 loading 0.0410
  • chr22:28,783,539 loading -0.0357
  • chr19:1,162,032 loading 0.0337
PC253 z = 2.58
  • chr27:12,240,889 loading 0.0349
  • chr22:40,186,686 loading -0.0299
  • chr3:9,727,004 loading 0.0298
PC120 z = 2.56
  • chr3:1,222,422 loading 0.0435
  • chr34:3,128,578 loading 0.0397
  • chr34:1,919,265 loading -0.0396
Ancestry reconstruction error: 0.53
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