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Cosmic medallion portrait of PILOT_grlsCOEDU1TT, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grlsCOEDU1TT

PILOT_grlsCOEDU1TT is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grlsCOEDU1TT in the atlas
About PILOT_grlsCOEDU1TT

PILOT_grlsCOEDU1TT sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PILOT_grlsCOEDU1TT's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grlsCOEDU1TT's. Click any of them to keep exploring.

  1. GRLS_grls2QHPY7DD Golden Retriever 27.61
  2. GRLS_grlsUBE49VBB Golden Retriever 29.04
  3. PILOT_grlsLVQBYXX Golden Retriever 32.64
  4. GRLS_grls92KYJ99 Golden Retriever 32.76
  5. GRLS_grls340LG1ZZ Golden Retriever 32.89
PILOT_grlsCOEDU1TT's breed

PILOT_grlsCOEDU1TT sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 80%
  2. Labrador Retriever 20%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.066
y 9.992
z 8.220
PCA-256 distance from breed centroid
34.25
Outlier percentile in breed
49
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsCOEDU1TT scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC145 z = 3.13
  • chr19:19,197,831 loading 0.0370
  • chr1:99,774,502 loading -0.0342
  • chr4:60,708,893 loading 0.0329
PC186 z = 2.92
  • chr3:6,234,729 loading 0.0318
  • chr23:19,305,339 loading 0.0317
  • chr19:17,376,904 loading 0.0316
PC177 z = 2.90
  • chr12:606,598 loading 0.0433
  • chr12:4,288,226 loading -0.0385
  • chr12:1,150,085 loading 0.0383
Ancestry reconstruction error: 0.56
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