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Cosmic medallion portrait of GRLS_grls5Q8YPTEE, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grls5Q8YPTEE

GRLS_grls5Q8YPTEE is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grls5Q8YPTEE in the atlas
About GRLS_grls5Q8YPTEE

GRLS_grls5Q8YPTEE sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grls5Q8YPTEE's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grls5Q8YPTEE's. Click any of them to keep exploring.

  1. GRLS_grlsTLHX4DRR Golden Retriever 27.31
  2. Oldies_grlsaf837bd5 Golden Retriever 28.51
  3. GRLS_grls59NQ2KXX Golden Retriever 28.64
  4. GRLS_grlsICYLHAA Golden Retriever 29.05
  5. GRLS_grlsYDU6FUQQ Golden Retriever 29.41
GRLS_grls5Q8YPTEE's breed

GRLS_grls5Q8YPTEE sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 80%
  2. Labrador Retriever 20%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.278
y 10.671
z 6.691
PCA-256 distance from breed centroid
27.19
Outlier percentile in breed
10
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls5Q8YPTEE scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC184 z = 2.17
  • chr21:19,144,029 loading 0.0303
  • chr13:28,713,034 loading -0.0303
  • chr15:5,912,708 loading 0.0300
PC149 z = -2.08
  • chr14:37,146,317 loading 0.0319
  • chr1:49,304,485 loading -0.0313
  • chr1:61,522,946 loading -0.0291
PC213 z = 2.02
  • chr28:12,405,348 loading 0.0374
  • chr22:28,989,668 loading -0.0358
  • chr20:42,542,218 loading -0.0345
Ancestry reconstruction error: 0.50
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