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Cosmic medallion portrait of GRLS_grls7DZ7OJBB, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grls7DZ7OJBB

GRLS_grls7DZ7OJBB is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grls7DZ7OJBB in the atlas
About GRLS_grls7DZ7OJBB

GRLS_grls7DZ7OJBB sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grls7DZ7OJBB's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grls7DZ7OJBB's. Click any of them to keep exploring.

  1. GRLS_grlsAG8H4W88 Golden Retriever 30.81
  2. GRLS_grlsHK07NZ11 Golden Retriever 31.72
  3. GRLS_grlsYFWBND88 Golden Retriever 32.60
  4. GRLS_grlsWZSGXLKK Golden Retriever 33.75
  5. GRLS_grlsEI1W4ZQQ Golden Retriever 33.83
GRLS_grls7DZ7OJBB's breed

GRLS_grls7DZ7OJBB sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 73%
  2. Labrador Retriever 27%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.790
y 10.846
z 7.815
PCA-256 distance from breed centroid
31.21
Outlier percentile in breed
33
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls7DZ7OJBB scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC135 z = -3.82
  • chr8:33,499,010 loading 0.0341
  • chr6:30,409,356 loading -0.0338
  • chr34:15,382,542 loading -0.0330
PC255 z = 2.48
  • chr23:37,041,440 loading 0.0347
  • chr1:100,944,840 loading 0.0344
  • chr1:101,382,836 loading -0.0320
PC182 z = 2.23
  • chr7:40,535,333 loading 0.0363
  • chr7:41,489,243 loading 0.0356
  • chr15:32,204,502 loading 0.0340
Ancestry reconstruction error: 0.57
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