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Cosmic medallion portrait of GRLS_grlsBVQHCYPP, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsBVQHCYPP

GRLS_grlsBVQHCYPP is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsBVQHCYPP in the atlas
About GRLS_grlsBVQHCYPP

GRLS_grlsBVQHCYPP is a strong genetic outlier within the Golden Retriever cluster - among the most distinctive examples of their breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsBVQHCYPP's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsBVQHCYPP's. Click any of them to keep exploring.

  1. GRLS_grlsXSQE6EUU Golden Retriever 32.24
  2. GRe_GT212_GRe_GT212 Golden Retriever 35.55
  3. GOLD_GRe_0GT212 Golden Retriever 35.62
  4. GRLS_grls6RRHX4TT Golden Retriever 37.06
  5. GRLS_grlsNLCY6W88 Golden Retriever 37.26
GRLS_grlsBVQHCYPP's breed

GRLS_grlsBVQHCYPP sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.045
y 9.187
z 7.900
PCA-256 distance from breed centroid
46.17
Outlier percentile in breed
93
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsBVQHCYPP scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC159 z = -3.68
  • chr1:17,158,018 loading 0.0357
  • chr5:59,845,529 loading 0.0334
  • chr11:16,824,143 loading -0.0291
PC49 z = -3.61
  • chr22:1,808,281 loading 0.0358
  • chr1:70,511,608 loading 0.0354
  • chr22:2,157,682 loading 0.0341
PC53 z = 3.56
  • chr1:72,254,803 loading 0.0346
  • chr1:70,825,780 loading 0.0344
  • chr14:9,177,180 loading 0.0335
Ancestry reconstruction error: 0.68
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