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Cosmic medallion portrait of GRLS_grlsCHA3ZO11, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsCHA3ZO11

GRLS_grlsCHA3ZO11 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsCHA3ZO11 in the atlas
About GRLS_grlsCHA3ZO11

GRLS_grlsCHA3ZO11 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsCHA3ZO11's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsCHA3ZO11's. Click any of them to keep exploring.

  1. GRLS_grlsC78EUT77 Golden Retriever 23.84
  2. GRLS_grlsX54PJKMM Golden Retriever 29.78
  3. Oldies_grls65978e8a Golden Retriever 33.97
  4. GRLS_grlsZS8EN0II Golden Retriever 34.37
  5. GRLS_grls38SUGH66 Golden Retriever 34.45
GRLS_grlsCHA3ZO11's breed

GRLS_grlsCHA3ZO11 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 80%
  2. Labrador Retriever 20%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.482
y 9.730
z 7.986
PCA-256 distance from breed centroid
33.12
Outlier percentile in breed
43
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsCHA3ZO11 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC185 z = 3.21
  • chr7:42,518,817 loading 0.0342
  • chr11:2,541,241 loading 0.0331
  • chr27:42,849,032 loading -0.0324
PC178 z = -3.06
  • chr1:96,988,408 loading 0.0367
  • chr25:3,927,722 loading -0.0336
  • chr25:4,418,784 loading 0.0319
PC97 z = -2.97
  • chr15:42,263,341 loading 0.0348
  • chr18:11,175,691 loading -0.0320
  • chr1:63,849,832 loading 0.0318
Ancestry reconstruction error: 0.55
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