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Cosmic medallion portrait of GRLS_grlsP8YVW3FF, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsP8YVW3FF

GRLS_grlsP8YVW3FF is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsP8YVW3FF in the atlas
About GRLS_grlsP8YVW3FF

GRLS_grlsP8YVW3FF sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsP8YVW3FF's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsP8YVW3FF's. Click any of them to keep exploring.

  1. GRLS_grlsTO409GSS Golden Retriever 24.86
  2. GRLS_grlsDO2VF8ZZ Golden Retriever 29.11
  3. PFZ42G01_PFZ42G01 Golden Retriever 30.32
  4. GRLS_grlsM1IE4PUU Golden Retriever 30.43
  5. GRLS_grlsV0BT15XX Golden Retriever 30.86
GRLS_grlsP8YVW3FF's breed

GRLS_grlsP8YVW3FF sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 80%
  2. Labrador Retriever 20%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.271
y 11.071
z 8.126
PCA-256 distance from breed centroid
26.77
Outlier percentile in breed
8
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsP8YVW3FF scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC178 z = 3.24
  • chr1:96,988,408 loading 0.0367
  • chr25:3,927,722 loading -0.0336
  • chr25:4,418,784 loading 0.0319
PC172 z = -2.44
  • chr13:4,083,191 loading 0.0359
  • chr24:4,114,956 loading 0.0356
  • chr13:12,284,714 loading 0.0349
PC130 z = 2.32
  • chr6:33,386,202 loading 0.0387
  • chr6:30,876,588 loading 0.0376
  • chr6:30,769,727 loading -0.0372
Ancestry reconstruction error: 0.53
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