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Cosmic medallion portrait of GRLS_grlsSWZTK2YY, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsSWZTK2YY

GRLS_grlsSWZTK2YY is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsSWZTK2YY in the atlas
About GRLS_grlsSWZTK2YY

GRLS_grlsSWZTK2YY sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsSWZTK2YY's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsSWZTK2YY's. Click any of them to keep exploring.

  1. GRLS_grlsTM2KR9LL Golden Retriever 24.16
  2. GRLS_grlsRYJD4TEE Golden Retriever 28.95
  3. PILOT_grlsIC0ZIROO Golden Retriever 29.93
  4. GRLS_grlsX2F2CUTT Golden Retriever 31.78
  5. Oldies_grlsccffb117 Golden Retriever 32.43
GRLS_grlsSWZTK2YY's breed

GRLS_grlsSWZTK2YY sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.326
y 9.473
z 7.785
PCA-256 distance from breed centroid
33.15
Outlier percentile in breed
43
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsSWZTK2YY scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC120 z = 2.85
  • chr3:1,222,422 loading 0.0435
  • chr34:3,128,578 loading 0.0397
  • chr34:1,919,265 loading -0.0396
PC66 z = -2.82
  • chr22:1,996,400 loading 0.0426
  • chr22:1,969,643 loading -0.0423
  • chr22:2,473,315 loading 0.0395
PC222 z = 2.75
  • chr12:60,458,843 loading 0.0369
  • chr13:14,089,127 loading 0.0363
  • chr34:29,222,122 loading -0.0309
Ancestry reconstruction error: 0.55
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