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Cosmic medallion portrait of GRLS_grlsXFBEMJKK, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsXFBEMJKK

GRLS_grlsXFBEMJKK is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsXFBEMJKK in the atlas
About GRLS_grlsXFBEMJKK

GRLS_grlsXFBEMJKK sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsXFBEMJKK's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsXFBEMJKK's. Click any of them to keep exploring.

  1. GRLS_grls2GWGQGHH Golden Retriever 33.73
  2. GRLS_grlsTYFNBPP Golden Retriever 34.59
  3. PILOT_grls4DM9Y9XX Golden Retriever 36.14
  4. GRLS_grlsKFBMOM22 Golden Retriever 36.30
  5. GRLS_grlsCQM5YQQ Golden Retriever 36.33
GRLS_grlsXFBEMJKK's breed

GRLS_grlsXFBEMJKK sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 74%
  2. Labrador Retriever 26%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.555
y 9.954
z 8.683
PCA-256 distance from breed centroid
34.19
Outlier percentile in breed
48
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsXFBEMJKK scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC166 z = 3.04
  • chr24:4,330,562 loading 0.0317
  • chr24:4,114,956 loading -0.0315
  • chr1:95,775,744 loading -0.0303
PC248 z = -2.78
  • chr26:5,045,393 loading 0.0400
  • chr26:4,196,092 loading -0.0355
  • chr26:4,873,718 loading -0.0344
PC113 z = 2.72
  • chr22:17,237,143 loading 0.0474
  • chr22:17,327,096 loading 0.0458
  • chr1:53,531,199 loading 0.0436
Ancestry reconstruction error: 0.55
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