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Cosmic medallion portrait of GRLS_grlsZ36Y96YY, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsZ36Y96YY

GRLS_grlsZ36Y96YY is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsZ36Y96YY in the atlas
About GRLS_grlsZ36Y96YY

GRLS_grlsZ36Y96YY sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsZ36Y96YY's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsZ36Y96YY's. Click any of them to keep exploring.

  1. GRLS_grlsVZFQZGBB Golden Retriever 28.79
  2. GRLS_grlsO3NBGJ44 Golden Retriever 31.92
  3. GRLS_grlsS4N38NEE Golden Retriever 32.60
  4. GRLS_grls1XUEQXNN Golden Retriever 32.65
  5. GRe_GT216_GRe_GT216 Golden Retriever 32.83
GRLS_grlsZ36Y96YY's breed

GRLS_grlsZ36Y96YY sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.521
y 10.493
z 9.275
PCA-256 distance from breed centroid
33.72
Outlier percentile in breed
46
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsZ36Y96YY scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC63 z = 2.76
  • chr22:1,969,643 loading 0.0329
  • chr22:1,892,165 loading 0.0327
  • chr17:12,181,234 loading 0.0322
PC82 z = -2.66
  • chr1:68,097,128 loading 0.0396
  • chr1:69,785,342 loading -0.0385
  • chr1:70,040,058 loading 0.0383
PC173 z = 2.59
  • chr17:4,173,842 loading 0.0406
  • chr17:4,233,511 loading 0.0400
  • chr17:4,353,120 loading 0.0343
Ancestry reconstruction error: 0.56
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