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Cosmic medallion portrait of GRLS_grlsZ621CMM, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsZ621CMM

GRLS_grlsZ621CMM is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsZ621CMM in the atlas
About GRLS_grlsZ621CMM

GRLS_grlsZ621CMM sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsZ621CMM's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsZ621CMM's. Click any of them to keep exploring.

  1. GRLS_grlsFYWMDHWW Golden Retriever 27.80
  2. GRLS_grls9QW2PE44 Golden Retriever 29.35
  3. Oldies_grls76179418 Golden Retriever 29.51
  4. GRLS_grls0ZJZZ9OO Golden Retriever 29.60
  5. GRLS_grlsZJU5H900 Golden Retriever 29.74
GRLS_grlsZ621CMM's breed

GRLS_grlsZ621CMM sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.885
y 10.303
z 7.699
PCA-256 distance from breed centroid
23.21
Outlier percentile in breed
0
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsZ621CMM scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC246 z = -2.16
  • chr4:78,506,139 loading 0.0305
  • chr26:20,960,217 loading -0.0303
  • chr22:28,657,814 loading -0.0289
PC239 z = 2.05
  • chr26:2,885,742 loading 0.0312
  • chr11:18,600,601 loading 0.0306
  • chr1:62,634,942 loading 0.0302
PC231 z = -1.95
  • chr23:12,238,858 loading 0.0365
  • chr30:3,110,542 loading 0.0349
  • chr26:5,761,213 loading -0.0320
Ancestry reconstruction error: 0.44
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