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CanVAS JenkinsWGS · Founder
Cosmic medallion portrait of JA_32552_JA_32552, a Japanese Akita
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

JA_32552_JA_32552

JA_32552_JA_32552 is a Japanese Akita from the JenkinsWGS research cohort. One of 14,478 dogs who built the atlas.

See JA_32552_JA_32552 in the atlas
About JA_32552_JA_32552
  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
JA_32552_JA_32552's nearest neighbors

The five dogs in the atlas whose genomes sit closest to JA_32552_JA_32552's. Click any of them to keep exploring.

  1. PFZ5B10_PFZ5B10 Akita 18.76
  2. PFZ4B03_PFZ4B03 Akita 18.79
  3. PFZ4D07_PFZ4D07 Akita 21.00
  4. PFZ6D01_PFZ6D01 Akita 21.75
  5. PFZ4G02_PFZ4G02 Akita 23.68
JA_32552_JA_32552's breed

JA_32552_JA_32552 sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 100%
Source

From the CanVAS (JenkinsWGS cohort) . Breed-page reference: Japanese Akita.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -1.869
y 14.938
z 9.565
Top-3 principal components by |z|

The 3 PCs on which JA_32552_JA_32552 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC100 z = -5.42
  • chr20:38,870,936 loading 0.0397
  • chr34:1,972,619 loading -0.0360
  • chr34:1,533,247 loading -0.0331
PC102 z = -5.41
  • chr6:44,418,248 loading 0.0371
  • chr21:24,347,827 loading 0.0363
  • chr13:28,713,034 loading 0.0324
PC103 z = 5.31
  • chr1:73,451,600 loading 0.0356
  • chr1:69,785,342 loading 0.0343
  • chr18:18,333,364 loading 0.0329
Ancestry reconstruction error: 0.28
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