Skip to main content
snıff
CanVAS Hayward2016 · Founder
Cosmic medallion portrait of Li20_Li20, a Village Dog Liberia Lofa
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

Li20_Li20

Li20_Li20 is labelled Village Dog Liberia Lofa in the Hayward2016 cohort - a catch-all CanVAS label, not a literal ancestry call. One of 14,478 dogs who built the atlas.

See Li20_Li20 in the atlas
About Li20_Li20

Li20_Li20 sits well inside the Village Dog Liberia Lofa cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
Li20_Li20's nearest neighbors

The five dogs in the atlas whose genomes sit closest to Li20_Li20's. Click any of them to keep exploring.

  1. Li43_Li43 Village Dog Liberia Lofa 18.45
  2. Li10_Li10 Village Dog Liberia Lofa 18.65
  3. Li60_Li60 Village Dog Liberia Lofa 19.32
  4. Li41_Li41 Village Dog Liberia Lofa 19.32
  5. Li49_Li49 Village Dog Liberia Lofa 19.52
Li20_Li20's breed

Li20_Li20 pulls strongly toward the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 100%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Village Dog Liberia Lofa.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 5.774
y 1.871
z 0.137
PCA-256 distance from breed centroid
14.02
Outlier percentile in breed
33
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Li20_Li20 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC26 z = -4.47
  • chr6:1,658,873 loading 0.0279
  • chr6:1,741,489 loading 0.0277
  • chr27:35,211,437 loading -0.0271
PC27 z = -3.11
  • chr12:64,188,765 loading 0.0337
  • chr23:18,821,315 loading -0.0287
  • chr4:53,307,196 loading -0.0287
PC236 z = -1.86
  • chr20:38,047,521 loading 0.0380
  • chr20:38,715,188 loading -0.0374
  • chr20:38,805,558 loading -0.0370
Ancestry reconstruction error: 0.42
Back to the Atlas →