CanVAS Shannon · Founder

Ne4_Ne4

Ne4_Ne4 is labelled Village Dog Nepal in the Shannon cohort - a catch-all CanVAS label, not a literal ancestry call. One of 14,478 dogs who built the atlas.

See Ne4_Ne4 in the atlas

About this name and portrait

I'm sure you probably guessed by now. These aren't real pictures of these dogs. And these aren't their real names.

But these dogs were real. They were alive. They were loved. We thought they deserved more than a subject ID to be remembered by. The portraits are built from each dog's actual genome, so we tried to get it close. But it's not enough.

We want to see your dog's face. We want to celebrate them by the name they were loved by. We want to look back and say 'oh yeah, Bosco? The Dachshund-Corgi mix? I remember him, his FGF4 variant was wild, those little legs could hold a small house.'

These dogs gave something most people don't realize. The Heroes in the Golden Retriever Lifetime Study showed up for blood draws, health surveys, fur and nail samples, every single year. Some of them for 14 years. Their data has taught us about lymphoma, hemangiosarcoma, and aging in ways that help not just dogs but potentially humans. And they didn't ask for any of it.

Morris Animal Foundation calls them Heroes. We agree.

If your dog was part of any of these studies, we want to give you their page. Their real name. Their real photo. The recognition they earned.

Email [email protected].

About Ne4_Ne4

Ne4_Ne4 sits near the center of the Village Dog Nepal cluster - genetically very typical for the breed.

Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
Standard leg length. No chondrodysplasia retrogene variant.
Wire-coat furnishings - the eyebrow + beard variant at RSPO2.

Ne4_Ne4's nearest neighbors

The five dogs in the atlas whose genomes sit closest to Ne4_Ne4's. Click any of them to keep exploring.

Ne4_Ne4's breed

Ne4_Ne4 pulls strongly toward the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

Golden Retriever 100%

Source

From the CanVAS (Shannon cohort) . Breed-page reference: Village Dog Nepal.

Full genotype detail

click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size

IGF1	A/A
HMGA2	T/T
SMAD2	G/G
LCORL	G/G
STC2	C/A
ADAMTS17	G/A

Leg length

FGF4·CFA18	C/C
FGF4·CFA12	C/C

Coat

RSPO2	T/T
FGF5	T/C
KRT71	C/C
MC1R	C/C

Ear set

MSRB3

G/G

Skull shape

BMP3	T/T
SMOC2	A/G

Technical details

click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position

x 4.425
y 4.449
z 0.783

PCA-256 distance from breed centroid

11.96

Outlier percentile in breed

lower = more typical

Top-3 principal components by |z|

The 3 PCs on which Ne4_Ne4 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC11 z = 3.11

chr6:60,987,558 loading 0.0302
chr18:25,790,852 loading 0.0293
chr14:14,074,192 loading -0.0293

PC113 z = 1.80

chr22:17,237,143 loading 0.0474
chr22:17,327,096 loading 0.0458
chr1:53,531,199 loading 0.0436

PC143 z = 1.78

chr19:5,388,895 loading 0.0376
chr3:44,551,375 loading -0.0365
chr19:3,007,160 loading 0.0337

Ancestry reconstruction error: 0.43

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