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GRLS Hero Oldie · Founder
Cosmic medallion portrait of Oldies_grlsb44cc36d, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

Oldies_grlsb44cc36d

Oldies_grlsb44cc36d is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See Oldies_grlsb44cc36d in the atlas
About Oldies_grlsb44cc36d

Oldies_grlsb44cc36d sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Smooth coat. No wire-furnishings variant at RSPO2.
Oldies_grlsb44cc36d's nearest neighbors

The five dogs in the atlas whose genomes sit closest to Oldies_grlsb44cc36d's. Click any of them to keep exploring.

  1. GRLS_grlsIGPYD4ZZ Golden Retriever 28.36
  2. GRLS_grlsNAR05OO Golden Retriever 29.92
  3. PFZ20A04_PFZ20A04 Golden Retriever 30.38
  4. GRLS_grlsJKE6Z88 Golden Retriever 31.30
  5. PFZ7F08_PFZ7F08 Golden Retriever 31.55
Oldies_grlsb44cc36d's breed

Oldies_grlsb44cc36d sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 84%
  2. Labrador Retriever 16%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.120
y 10.045
z 7.207
PCA-256 distance from breed centroid
33.12
Outlier percentile in breed
43
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Oldies_grlsb44cc36d scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC240 z = 3.26
  • chr16:43,515,565 loading 0.0364
  • chr12:4,421,359 loading 0.0345
  • chr12:4,288,226 loading 0.0342
PC203 z = 3.17
  • chr1:100,458,946 loading 0.0361
  • chr1:100,542,384 loading 0.0353
  • chr24:4,330,562 loading -0.0340
PC171 z = -3.16
  • chr1:99,975,270 loading 0.0421
  • chr1:99,774,502 loading 0.0419
  • chr1:99,902,496 loading 0.0354
Ancestry reconstruction error: 0.59
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