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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ13A11_PFZ13A11, a Dogue De Bordeaux
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ13A11_PFZ13A11

PFZ13A11_PFZ13A11 is a Dogue De Bordeaux from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ13A11_PFZ13A11 in the atlas
About PFZ13A11_PFZ13A11

PFZ13A11_PFZ13A11 is a notable Dogue De Bordeaux - distinctive within the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ13A11_PFZ13A11's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ13A11_PFZ13A11's. Click any of them to keep exploring.

  1. PFZ13B11_PFZ13B11 Dogue De Bordeaux 17.83
  2. PFZ13D11_PFZ13D11 Dogue De Bordeaux 20.07
  3. DDBX_DDBX_24936 Dogue De Bordeaux 41.05
  4. DDBX_DDBX_24930 Dogue De Bordeaux 41.07
  5. DDBX_DDBX_24933 Dogue De Bordeaux 41.08
PFZ13A11_PFZ13A11's breed

PFZ13A11_PFZ13A11 sits in the Boxer cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Boxer 61%
  2. Golden Retriever 39%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Dogue De Bordeaux.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 C/C
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/T
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 2.469
y 1.548
z 1.901
PCA-256 distance from breed centroid
28.27
Outlier percentile in breed
78
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ13A11_PFZ13A11 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC248 z = -6.63
  • chr26:5,045,393 loading 0.0400
  • chr26:4,196,092 loading -0.0355
  • chr26:4,873,718 loading -0.0344
PC184 z = -6.46
  • chr21:19,144,029 loading 0.0303
  • chr13:28,713,034 loading -0.0303
  • chr15:5,912,708 loading 0.0300
PC240 z = -5.30
  • chr16:43,515,565 loading 0.0364
  • chr12:4,421,359 loading 0.0345
  • chr12:4,288,226 loading 0.0342
Ancestry reconstruction error: 0.83
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