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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ16E06_PFZ16E06, a Great Pyrenees
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ16E06_PFZ16E06

PFZ16E06_PFZ16E06 is a Great Pyrenees from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ16E06_PFZ16E06 in the atlas
About PFZ16E06_PFZ16E06

PFZ16E06_PFZ16E06 sits at the edge of the Great Pyrenees cluster but still well within it.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ16E06_PFZ16E06's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ16E06_PFZ16E06's. Click any of them to keep exploring.

  1. PFZ16H02_PFZ16H02 Great Pyrenees 19.82
  2. PFZ10C05_PFZ10C05 Great Pyrenees 19.85
  3. PFZ10D05_PFZ10D05 Great Pyrenees 24.51
  4. PFZ16E07_PFZ16E07 Great Pyrenees 26.11
  5. PFZ17E11_PFZ17E11 Great Pyrenees 26.12
PFZ16E06_PFZ16E06's breed

PFZ16E06_PFZ16E06 sits in the Great Pyrenees cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Great Pyrenees 89%
  2. Golden Retriever 11%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Great Pyrenees.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 C/C
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 G/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -0.222
y -2.501
z 5.081
PCA-256 distance from breed centroid
24.33
Outlier percentile in breed
50
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ16E06_PFZ16E06 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC98 z = 7.91
  • chr1:70,040,058 loading 0.0369
  • chr1:99,414,793 loading -0.0351
  • chr24:7,157,643 loading 0.0343
PC95 z = -7.35
  • chr22:27,265,197 loading 0.0431
  • chr5:72,529,391 loading 0.0328
  • chr10:5,349,288 loading 0.0317
PC110 z = 6.06
  • chr25:1,742,133 loading 0.0401
  • chr28:2,607,542 loading 0.0393
  • chr25:1,819,027 loading 0.0392
Ancestry reconstruction error: 0.30
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