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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ17D01_PFZ17D01, a Pyrenean Shepherd
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ17D01_PFZ17D01

PFZ17D01_PFZ17D01 is a Pyrenean Shepherd from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ17D01_PFZ17D01 in the atlas
About PFZ17D01_PFZ17D01
  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ17D01_PFZ17D01's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ17D01_PFZ17D01's. Click any of them to keep exploring.

  1. PFZ3E04_PFZ3E04 Village Dog Brazil 22.54
  2. 8233_8233 Village Dog Belize 23.46
  3. PFZ2H01_PFZ2H01 Village Dog Peru Puno 23.48
  4. PFZ2H11_PFZ2H11 Village Dog Peru Loreto 23.49
  5. PFZ3D04_PFZ3D04 Village Dog Portugal 23.50
PFZ17D01_PFZ17D01's breed

PFZ17D01_PFZ17D01 sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 100%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Pyrenean Shepherd.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 A/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 G/G
Skull shape
BMP3 T/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.388
y 1.310
z 1.885
Top-3 principal components by |z|

The 3 PCs on which PFZ17D01_PFZ17D01 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC243 z = -2.19
  • chr28:2,607,542 loading 0.0337
  • chr6:55,527,821 loading 0.0334
  • chr28:36,111,093 loading -0.0311
PC188 z = 2.11
  • chr7:21,167,050 loading 0.0346
  • chr25:32,919,094 loading 0.0335
  • chr7:21,698,587 loading 0.0335
PC240 z = 1.73
  • chr16:43,515,565 loading 0.0364
  • chr12:4,421,359 loading 0.0345
  • chr12:4,288,226 loading 0.0342
Ancestry reconstruction error: 0.66
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