Skip to main content
snıff
CanVAS Shannon · Founder
Cosmic medallion portrait of PFZ31C10_PFZ31C10, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ31C10_PFZ31C10

PFZ31C10_PFZ31C10 is a Golden Retriever from the Shannon research cohort. One of 14,478 dogs who built the atlas.

See PFZ31C10_PFZ31C10 in the atlas
About PFZ31C10_PFZ31C10

PFZ31C10_PFZ31C10 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ31C10_PFZ31C10's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ31C10_PFZ31C10's. Click any of them to keep exploring.

  1. PFZ31E11_PFZ31E11 Golden Retriever 26.88
  2. PFZ31H10_PFZ31H10 Golden Retriever 30.46
  3. PFZ31C11_PFZ31C11 Golden Retriever 30.60
  4. PFZ31B11_PFZ31B11 Golden Retriever 31.83
  5. GRLS_grls74CM5J99 Golden Retriever 32.38
PFZ31C10_PFZ31C10's breed

PFZ31C10_PFZ31C10 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.493
y 10.741
z 8.807
PCA-256 distance from breed centroid
34.42
Outlier percentile in breed
50
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ31C10_PFZ31C10 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC130 z = 2.77
  • chr6:33,386,202 loading 0.0387
  • chr6:30,876,588 loading 0.0376
  • chr6:30,769,727 loading -0.0372
PC162 z = -2.46
  • chr6:16,267,511 loading 0.0413
  • chr6:16,208,125 loading 0.0394
  • chr6:17,304,623 loading -0.0387
PC208 z = 2.36
  • chr17:4,173,842 loading 0.0377
  • chr17:4,128,965 loading 0.0376
  • chr17:4,233,511 loading 0.0366
Ancestry reconstruction error: 0.57
Back to the Atlas →