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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ39C03_PFZ39C03, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ39C03_PFZ39C03

PFZ39C03_PFZ39C03 is a Golden Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ39C03_PFZ39C03 in the atlas
About PFZ39C03_PFZ39C03

PFZ39C03_PFZ39C03 is a notable Golden Retriever - distinctive within the breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ39C03_PFZ39C03's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ39C03_PFZ39C03's. Click any of them to keep exploring.

  1. Oldies_grlse5e88610 Golden Retriever 34.00
  2. GRLS_grlsS2RFRHMM Golden Retriever 35.47
  3. PILOT_grlsFY5J2IJJ Golden Retriever 35.49
  4. GRLS_grlsXALOSOZZ Golden Retriever 35.78
  5. GRLS_grlsNJ3YMTMM Golden Retriever 35.87
PFZ39C03_PFZ39C03's breed

PFZ39C03_PFZ39C03 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.215
y 9.551
z 9.378
PCA-256 distance from breed centroid
39.93
Outlier percentile in breed
76
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ39C03_PFZ39C03 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC134 z = 3.72
  • chr17:4,173,842 loading 0.0386
  • chr17:4,233,511 loading 0.0332
  • chr20:7,717,784 loading -0.0325
PC79 z = -3.57
  • chr3:7,389,779 loading 0.0444
  • chr3:6,720,531 loading -0.0378
  • chr3:6,392,552 loading -0.0378
PC53 z = -2.88
  • chr1:72,254,803 loading 0.0346
  • chr1:70,825,780 loading 0.0344
  • chr14:9,177,180 loading 0.0335
Ancestry reconstruction error: 0.63
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