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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ39G05_PFZ39G05, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ39G05_PFZ39G05

PFZ39G05_PFZ39G05 is a Golden Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ39G05_PFZ39G05 in the atlas
About PFZ39G05_PFZ39G05

PFZ39G05_PFZ39G05 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ39G05_PFZ39G05's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ39G05_PFZ39G05's. Click any of them to keep exploring.

  1. PFZ24E03_PFZ24E03 Golden Retriever 29.50
  2. PFZ23E01_PFZ23E01 Golden Retriever 30.79
  3. GRLS_grls6PQ77AKK Golden Retriever 31.50
  4. Oldies_grls2e1693f3 Golden Retriever 31.60
  5. Oldies_grls767408f1 Golden Retriever 31.63
PFZ39G05_PFZ39G05's breed

PFZ39G05_PFZ39G05 sits in the American Cocker Spaniel cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. American Cocker Spaniel 43%
  2. Golden Retriever 41%
  3. Labrador Retriever 16%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 G/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.995
y 11.528
z 7.466
PCA-256 distance from breed centroid
36.34
Outlier percentile in breed
60
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ39G05_PFZ39G05 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = -3.33
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC186 z = 2.99
  • chr3:6,234,729 loading 0.0318
  • chr23:19,305,339 loading 0.0317
  • chr19:17,376,904 loading 0.0316
PC148 z = 2.46
  • chr6:30,769,727 loading 0.0436
  • chr1:62,992,483 loading -0.0356
  • chr6:30,876,588 loading -0.0355
Ancestry reconstruction error: 0.72
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