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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ42F04_PFZ42F04, a Beagle
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ42F04_PFZ42F04

PFZ42F04_PFZ42F04 is a Beagle from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ42F04_PFZ42F04 in the atlas
About PFZ42F04_PFZ42F04

PFZ42F04_PFZ42F04 sits at the edge of the Beagle cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ42F04_PFZ42F04's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ42F04_PFZ42F04's. Click any of them to keep exploring.

  1. PFZ42F02_PFZ42F02 Beagle 17.49
  2. PFZ44G08_PFZ44G08 Beagle 18.50
  3. PFZ43F11_PFZ43F11 Beagle 18.82
  4. PFZ44D12_PFZ44D12 Beagle 19.11
  5. PFZ42G02_PFZ42G02 Beagle 19.16
PFZ42F04_PFZ42F04's breed

PFZ42F04_PFZ42F04 sits in the Beagle cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Beagle 91%
  2. Golden Retriever 9%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Beagle.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 T/T
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 1.153
y 5.218
z 3.851
PCA-256 distance from breed centroid
25.95
Outlier percentile in breed
57
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ42F04_PFZ42F04 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC47 z = 4.56
  • chr22:2,367,358 loading 0.0405
  • chr22:5,622,508 loading -0.0403
  • chr22:4,235,154 loading -0.0403
PC48 z = -4.18
  • chr2:6,428,604 loading 0.0354
  • chr22:6,962,924 loading 0.0351
  • chr12:19,589,576 loading 0.0339
PC42 z = -3.83
  • chr14:22,119,741 loading 0.0316
  • chr5:79,283,975 loading -0.0300
  • chr5:64,357,114 loading -0.0296
Ancestry reconstruction error: 0.45
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