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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ8E04_PFZ8E04, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ8E04_PFZ8E04

PFZ8E04_PFZ8E04 is a Golden Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ8E04_PFZ8E04 in the atlas
About PFZ8E04_PFZ8E04

PFZ8E04_PFZ8E04 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ8E04_PFZ8E04's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ8E04_PFZ8E04's. Click any of them to keep exploring.

  1. GRLS_grls5Q8YPTEE Golden Retriever 29.64
  2. GRLS_grlsYDU6FUQQ Golden Retriever 30.45
  3. GRLS_grlsEZU6HFFF Golden Retriever 30.48
  4. GRLS_grls1W2Z1HOO Golden Retriever 30.84
  5. GRLS_grls5YQ9QAOO Golden Retriever 31.18
PFZ8E04_PFZ8E04's breed

PFZ8E04_PFZ8E04 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 75%
  2. Labrador Retriever 25%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.396
y 10.674
z 6.358
PCA-256 distance from breed centroid
31.78
Outlier percentile in breed
37
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ8E04_PFZ8E04 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC244 z = -2.56
  • chr9:27,289,940 loading 0.0354
  • chr25:21,796,415 loading 0.0335
  • chr20:38,277,512 loading -0.0333
PC63 z = 2.38
  • chr22:1,969,643 loading 0.0329
  • chr22:1,892,165 loading 0.0327
  • chr17:12,181,234 loading 0.0322
PC134 z = 2.31
  • chr17:4,173,842 loading 0.0386
  • chr17:4,233,511 loading 0.0332
  • chr20:7,717,784 loading -0.0325
Ancestry reconstruction error: 0.58
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