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Cosmic medallion portrait of PILOT_grlsDMW43200, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grlsDMW43200

PILOT_grlsDMW43200 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grlsDMW43200 in the atlas
About PILOT_grlsDMW43200

PILOT_grlsDMW43200 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PILOT_grlsDMW43200's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grlsDMW43200's. Click any of them to keep exploring.

  1. GRLS_grlsJ9NRL355 Golden Retriever 21.81
  2. GRLS_grls7259A4YY Golden Retriever 30.88
  3. GRLS_grlsAT76IAA Golden Retriever 32.62
  4. PFZ42G01_PFZ42G01 Golden Retriever 32.85
  5. Oldies_grls9493adbc Golden Retriever 33.32
PILOT_grlsDMW43200's breed

PILOT_grlsDMW43200 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 73%
  2. Labrador Retriever 27%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.885
y 9.684
z 7.742
PCA-256 distance from breed centroid
29.97
Outlier percentile in breed
26
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsDMW43200 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC66 z = -2.89
  • chr22:1,996,400 loading 0.0426
  • chr22:1,969,643 loading -0.0423
  • chr22:2,473,315 loading 0.0395
PC153 z = 2.64
  • chr1:8,915,253 loading 0.0302
  • chr21:10,672,189 loading 0.0296
  • chr32:19,444,200 loading -0.0293
PC175 z = -2.27
  • chr4:78,342,208 loading 0.0332
  • chr20:38,715,188 loading 0.0330
  • chr20:38,805,558 loading 0.0328
Ancestry reconstruction error: 0.54
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