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Cosmic medallion portrait of GRLS_grlsAT76IAA, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsAT76IAA

GRLS_grlsAT76IAA is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsAT76IAA in the atlas
About GRLS_grlsAT76IAA

GRLS_grlsAT76IAA sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsAT76IAA's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsAT76IAA's. Click any of them to keep exploring.

  1. PILOT_grlsDMW43200 Golden Retriever 32.62
  2. GRLS_grls7PGZ1RNN Golden Retriever 33.24
  3. PILOT_grls43D0DWTT Golden Retriever 33.34
  4. GRLS_grls7259A4YY Golden Retriever 34.24
  5. GRLS_grlsZ621CMM Golden Retriever 34.40
GRLS_grlsAT76IAA's breed

GRLS_grlsAT76IAA sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.796
y 10.475
z 7.862
PCA-256 distance from breed centroid
30.99
Outlier percentile in breed
32
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsAT76IAA scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC240 z = -3.35
  • chr16:43,515,565 loading 0.0364
  • chr12:4,421,359 loading 0.0345
  • chr12:4,288,226 loading 0.0342
PC182 z = -3.32
  • chr7:40,535,333 loading 0.0363
  • chr7:41,489,243 loading 0.0356
  • chr15:32,204,502 loading 0.0340
PC169 z = -2.62
  • chr11:19,692,422 loading 0.0364
  • chr11:16,885,817 loading -0.0352
  • chr9:14,385,903 loading 0.0333
Ancestry reconstruction error: 0.56
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