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Cosmic medallion portrait of PILOT_grlsH1FCL5JJ, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grlsH1FCL5JJ

PILOT_grlsH1FCL5JJ is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grlsH1FCL5JJ in the atlas
About PILOT_grlsH1FCL5JJ

PILOT_grlsH1FCL5JJ sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PILOT_grlsH1FCL5JJ's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grlsH1FCL5JJ's. Click any of them to keep exploring.

  1. GRLS_grlsDM8Z0THH Golden Retriever 32.06
  2. GRLS_grls84LL93EE Golden Retriever 32.60
  3. GRLS_grlsI5PDR7NN Golden Retriever 32.95
  4. Oldies_grlse9bff9de Golden Retriever 34.68
  5. GRLS_grlsYRLJ3P55 Golden Retriever 37.13
PILOT_grlsH1FCL5JJ's breed

PILOT_grlsH1FCL5JJ sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 77%
  2. Labrador Retriever 23%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.225
y 9.731
z 8.070
PCA-256 distance from breed centroid
35.99
Outlier percentile in breed
58
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsH1FCL5JJ scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC200 z = -3.07
  • chr26:9,892,015 loading 0.0403
  • chr19:3,081,516 loading 0.0393
  • chr26:3,675,581 loading 0.0362
PC234 z = 2.87
  • chr4:83,381,939 loading 0.0343
  • chr10:64,946,466 loading 0.0322
  • chr30:24,029,755 loading -0.0321
PC170 z = 2.81
  • chr28:5,428,661 loading 0.0343
  • chr2:48,019,031 loading -0.0318
  • chr2:8,786,956 loading 0.0314
Ancestry reconstruction error: 0.59
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