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Cosmic medallion portrait of PILOT_grlsHL9OSX55, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grlsHL9OSX55

PILOT_grlsHL9OSX55 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grlsHL9OSX55 in the atlas
About PILOT_grlsHL9OSX55

PILOT_grlsHL9OSX55 is a notable Golden Retriever - distinctive within the breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PILOT_grlsHL9OSX55's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grlsHL9OSX55's. Click any of them to keep exploring.

  1. GRLS_grlsURFSOP88 Golden Retriever 33.02
  2. GRe_GT216_GRe_GT216 Golden Retriever 35.20
  3. GRLS_grlsI8CE766 Golden Retriever 35.23
  4. GRLS_grlsRQ7AU5XX Golden Retriever 35.65
  5. W_GRe_GRe_GT216 Golden Retriever 35.67
PILOT_grlsHL9OSX55's breed

PILOT_grlsHL9OSX55 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 84%
  2. Labrador Retriever 16%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.479
y 10.569
z 9.625
PCA-256 distance from breed centroid
41.49
Outlier percentile in breed
82
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsHL9OSX55 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC64 z = -4.10
  • chr8:38,372,734 loading 0.0317
  • chr23:20,107,050 loading 0.0304
  • chr23:19,874,668 loading -0.0292
PC63 z = 3.83
  • chr22:1,969,643 loading 0.0329
  • chr22:1,892,165 loading 0.0327
  • chr17:12,181,234 loading 0.0322
PC113 z = 3.68
  • chr22:17,237,143 loading 0.0474
  • chr22:17,327,096 loading 0.0458
  • chr1:53,531,199 loading 0.0436
Ancestry reconstruction error: 0.61
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