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Cosmic medallion portrait of PILOT_grlsNDQY5Y55, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grlsNDQY5Y55

PILOT_grlsNDQY5Y55 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grlsNDQY5Y55 in the atlas
About PILOT_grlsNDQY5Y55

PILOT_grlsNDQY5Y55 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PILOT_grlsNDQY5Y55's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grlsNDQY5Y55's. Click any of them to keep exploring.

  1. GRLS_grls5WX99411 Golden Retriever 33.81
  2. PFZ43H09_PFZ43H09 Golden Retriever 33.96
  3. GRLS_grlsRH18HHQQ Golden Retriever 34.37
  4. GRLS_grlsK4YY7YRR Golden Retriever 34.42
  5. GRLS_grls6KIC0H88 Golden Retriever 34.54
PILOT_grlsNDQY5Y55's breed

PILOT_grlsNDQY5Y55 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.424
y 9.193
z 8.748
PCA-256 distance from breed centroid
36.25
Outlier percentile in breed
59
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsNDQY5Y55 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC205 z = 2.87
  • chr28:15,673,727 loading 0.0386
  • chr7:26,386,959 loading -0.0358
  • chr7:26,293,949 loading -0.0338
PC66 z = 2.76
  • chr22:1,996,400 loading 0.0426
  • chr22:1,969,643 loading -0.0423
  • chr22:2,473,315 loading 0.0395
PC99 z = -2.39
  • chr34:1,972,619 loading 0.0494
  • chr34:1,533,247 loading 0.0454
  • chr34:2,440,834 loading -0.0445
Ancestry reconstruction error: 0.56
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