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CanVAS HaywardDeaf · Founder
Cosmic medallion portrait of 20039_20039, a Dalmatian
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

20039_20039

20039_20039 is a Dalmatian from the HaywardDeaf research cohort. One of 14,478 dogs who built the atlas.

See 20039_20039 in the atlas
About 20039_20039

20039_20039 sits well inside the Dalmatian cluster - a fairly typical example.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
20039_20039's nearest neighbors

The five dogs in the atlas whose genomes sit closest to 20039_20039's. Click any of them to keep exploring.

  1. 20040_20040 Dalmatian 11.45
  2. 11740_11740 Dalmatian 16.60
  3. 11741_11741 Dalmatian 17.03
  4. 11493_11493 Dalmatian 18.04
  5. 10693_10693 Dalmatian 19.55
20039_20039's breed

20039_20039 sits in the Dalmatian cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Dalmatian 88%
  2. Labrador Retriever 6%
  3. Golden Retriever 6%
Source

From the CanVAS (HaywardDeaf cohort) . Breed-page reference: Dalmatian.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 A/A
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 T/T
FGF4·CFA12 T/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 3.337
y -4.750
z 9.973
PCA-256 distance from breed centroid
32.61
Outlier percentile in breed
29
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which 20039_20039 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC8 z = -5.29
  • chr38:12,072,793 loading 0.0279
  • chr3:65,092,835 loading 0.0273
  • chr10:7,098,202 loading 0.0260
PC36 z = -3.87
  • chr18:29,956,251 loading 0.0345
  • chr26:19,556,698 loading 0.0316
  • chr21:15,780,220 loading -0.0288
PC33 z = -2.83
  • chr10:30,540,439 loading 0.0269
  • chr9:55,813,941 loading -0.0264
  • chr2:7,852,884 loading 0.0260
Ancestry reconstruction error: 0.47
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