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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of 5313_5313, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

5313_5313

5313_5313 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See 5313_5313 in the atlas
About 5313_5313

5313_5313 sits at the edge of the Labrador Retriever cluster but still well within it.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Carrier of the RSPO2 wire-coat variant (single copy).
5313_5313's nearest neighbors

The five dogs in the atlas whose genomes sit closest to 5313_5313's. Click any of them to keep exploring.

  1. 3085_3085 Labrador Retriever 20.66
  2. cHD10_528_cHD10_528 Labrador Or Golden Retriever 22.22
  3. cHD10_555_cHD10_555 Labrador Or Golden Retriever 22.36
  4. cHD11_178_cHD11_178 Labrador Retriever 22.37
  5. cHD11_111_cHD11_111 Labrador Retriever 22.92
5313_5313's breed

5313_5313 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 78%
  2. Golden Retriever 22%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/T
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.039
y 0.004
z 8.422
PCA-256 distance from breed centroid
61.13
Outlier percentile in breed
60
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which 5313_5313 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC3 z = -2.84
  • chr6:50,750,182 loading 0.0295
  • chr6:65,585,567 loading 0.0275
  • chr1:14,618,344 loading 0.0264
PC20 z = 2.82
  • chr29:37,511,112 loading 0.0311
  • chr15:28,326,342 loading -0.0273
  • chr35:8,740,750 loading 0.0271
PC2 z = -2.52
  • chr32:5,376,122 loading 0.0244
  • chr22:41,669,426 loading -0.0232
  • chr9:23,202,173 loading 0.0228
Ancestry reconstruction error: 0.88
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