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CanVAS Wiener · Founder
Cosmic medallion portrait of 553_380G_2411, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

553_380G_2411

553_380G_2411 is a Labrador Retriever from the Wiener research cohort. One of 14,478 dogs who built the atlas.

See 553_380G_2411 in the atlas
About 553_380G_2411

553_380G_2411 is a strong genetic outlier within the Labrador Retriever cluster - among the most distinctive examples of their breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
553_380G_2411's nearest neighbors

The five dogs in the atlas whose genomes sit closest to 553_380G_2411's. Click any of them to keep exploring.

  1. 890_380G_1571 Labrador Retriever 17.77
  2. 323_G0380_0570 Labrador Retriever 18.47
  3. 469_G0380_0992 Labrador Retriever 18.50
  4. 432_G0380_0852 Labrador Retriever 18.67
  5. 482_G0380_1028 Labrador Retriever 18.73
553_380G_2411's breed

553_380G_2411 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 75%
  2. Golden Retriever 25%
Source

From the CanVAS (Wiener cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 C/C
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 –
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 G/G
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -3.222
y 7.333
z 11.385
PCA-256 distance from breed centroid
70.96
Outlier percentile in breed
94
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which 553_380G_2411 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC25 z = 7.32
  • chr5:76,272,702 loading 0.0268
  • chr15:24,890,350 loading -0.0263
  • chr4:32,151,890 loading 0.0256
PC10 z = 3.07
  • chr13:43,330,325 loading 0.0255
  • chr17:50,562,684 loading 0.0245
  • chr19:34,146,978 loading 0.0244
PC227 z = -2.61
  • chr27:43,803,988 loading 0.0373
  • chr12:19,514,576 loading 0.0344
  • chr20:11,758,428 loading -0.0328
Ancestry reconstruction error: 0.60
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