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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of 5896_5896, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

5896_5896

5896_5896 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See 5896_5896 in the atlas
About 5896_5896

5896_5896 sits at the edge of the Labrador Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
5896_5896's nearest neighbors

The five dogs in the atlas whose genomes sit closest to 5896_5896's. Click any of them to keep exploring.

  1. PFZ5H03_PFZ5H03 Labrador Retriever 19.96
  2. PFZ41D08_PFZ41D08 Labrador Retriever 20.42
  3. 3748_3748 Labrador Retriever 20.42
  4. 5308_5308 Labrador Retriever 21.33
  5. PFZ38E11_PFZ38E11 Labrador Retriever 21.42
5896_5896's breed

5896_5896 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 75%
  2. Golden Retriever 25%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/T
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.730
y 0.965
z 4.688
PCA-256 distance from breed centroid
60.19
Outlier percentile in breed
54
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which 5896_5896 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC36 z = -3.99
  • chr18:29,956,251 loading 0.0345
  • chr26:19,556,698 loading 0.0316
  • chr21:15,780,220 loading -0.0288
PC56 z = 3.78
  • chr4:50,564,575 loading 0.0345
  • chr20:9,086,763 loading 0.0319
  • chr15:1,031,002 loading -0.0297
PC58 z = -3.68
  • chr1:34,766,687 loading 0.0326
  • chr12:57,607,923 loading -0.0310
  • chr6:35,486,219 loading 0.0308
Ancestry reconstruction error: 0.92 (high - dog sits between cluster centroids)
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