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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of 5928_5928, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

5928_5928

5928_5928 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See 5928_5928 in the atlas
About 5928_5928

5928_5928 sits well inside the Labrador Retriever cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
5928_5928's nearest neighbors

The five dogs in the atlas whose genomes sit closest to 5928_5928's. Click any of them to keep exploring.

  1. PFZ1E08_PFZ1E08 Labrador Retriever 21.97
  2. cHD11_160_cHD11_160 Labrador Retriever 22.63
  3. 4032_4032 Labrador Retriever 24.17
  4. PFZ16D05_PFZ16D05 Labrador Retriever 24.27
  5. PFZ5A02_PFZ5A02 Labrador Retriever 24.97
5928_5928's breed

5928_5928 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 77%
  2. Golden Retriever 23%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.920
y 0.073
z 7.960
PCA-256 distance from breed centroid
56.47
Outlier percentile in breed
33
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which 5928_5928 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC205 z = 2.75
  • chr28:15,673,727 loading 0.0386
  • chr7:26,386,959 loading -0.0358
  • chr7:26,293,949 loading -0.0338
PC3 z = -2.61
  • chr6:50,750,182 loading 0.0295
  • chr6:65,585,567 loading 0.0275
  • chr1:14,618,344 loading 0.0264
PC207 z = 2.54
  • chr13:666,991 loading 0.0347
  • chr25:4,215,319 loading -0.0336
  • chr18:33,604,976 loading 0.0307
Ancestry reconstruction error: 0.87
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