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CanVAS JenkinsWGS · Founder
Cosmic medallion portrait of BC_24093_BC_24093, a Border Collie
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

BC_24093_BC_24093

BC_24093_BC_24093 is a Border Collie from the JenkinsWGS research cohort. One of 14,478 dogs who built the atlas.

See BC_24093_BC_24093 in the atlas
About BC_24093_BC_24093

BC_24093_BC_24093 sits near the center of the Border Collie cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
BC_24093_BC_24093's nearest neighbors

The five dogs in the atlas whose genomes sit closest to BC_24093_BC_24093's. Click any of them to keep exploring.

  1. PFZ8A09_PFZ8A09 Border Collie 16.66
  2. PFZ36B09_PFZ36B09 Border Collie 16.72
  3. PFZ6F10_PFZ6F10 Border Collie 17.14
  4. PFZ8A05_PFZ8A05 Border Collie 17.28
  5. PFZ6H11_PFZ6H11 Border Collie 17.37
BC_24093_BC_24093's breed

BC_24093_BC_24093 sits in the Border Collie cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Border Collie 72%
  2. Labrador Retriever 15%
  3. Golden Retriever 13%
Source

From the CanVAS (JenkinsWGS cohort) . Breed-page reference: Border Collie.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 T/T
MC1R C/C
Ear set
MSRB3 G/A
Skull shape
BMP3 C/C
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 11.268
y 8.906
z -3.991
PCA-256 distance from breed centroid
29.37
Outlier percentile in breed
8
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which BC_24093_BC_24093 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC28 z = -5.36
  • chr1:23,982,151 loading 0.0270
  • chr20:38,628,243 loading 0.0270
  • chr12:42,365,450 loading 0.0269
PC27 z = 4.84
  • chr12:64,188,765 loading 0.0337
  • chr23:18,821,315 loading -0.0287
  • chr4:53,307,196 loading -0.0287
PC30 z = 3.83
  • chr22:1,635,288 loading 0.0319
  • chr13:9,677,426 loading 0.0297
  • chr7:41,071,296 loading 0.0289
Ancestry reconstruction error: 0.41
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