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CanVAS Spatola · Founder
Cosmic medallion portrait of BORD_BORD_28461, a Border Collie
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

BORD_BORD_28461

BORD_BORD_28461 is a Border Collie from the Spatola research cohort. One of 14,478 dogs who built the atlas.

See BORD_BORD_28461 in the atlas
About BORD_BORD_28461

BORD_BORD_28461 sits at the edge of the Border Collie cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
BORD_BORD_28461's nearest neighbors

The five dogs in the atlas whose genomes sit closest to BORD_BORD_28461's. Click any of them to keep exploring.

  1. BORD_BORD_12713 Border Collie 14.31
  2. BORD_BORD_28463 Border Collie 14.51
  3. BORD_BORD_11125 Border Collie 14.57
  4. BORD_BORD_27579 Border Collie 14.76
  5. BORD_BoC_00GT64 Border Collie 15.20
BORD_BORD_28461's breed

BORD_BORD_28461 sits in the Border Collie cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Border Collie 66%
  2. Labrador Retriever 19%
  3. Golden Retriever 15%
Source

From the CanVAS (Spatola cohort) . Breed-page reference: Border Collie.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 –
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 –
ADAMTS17 –
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 T/C
MC1R C/C
Ear set
MSRB3 –
Skull shape
BMP3 –
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 0.942
y -1.102
z 4.475
PCA-256 distance from breed centroid
35.73
Outlier percentile in breed
58
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which BORD_BORD_28461 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC28 z = -3.14
  • chr1:23,982,151 loading 0.0270
  • chr20:38,628,243 loading 0.0270
  • chr12:42,365,450 loading 0.0269
PC27 z = 2.54
  • chr12:64,188,765 loading 0.0337
  • chr23:18,821,315 loading -0.0287
  • chr4:53,307,196 loading -0.0287
PC30 z = 1.91
  • chr22:1,635,288 loading 0.0319
  • chr13:9,677,426 loading 0.0297
  • chr7:41,071,296 loading 0.0289
Ancestry reconstruction error: 0.37
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