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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of C3-Bennie-PSVA-CT_C3-Bennie-PSVA-CT
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

C3-Bennie-PSVA-CT_C3-Bennie-PSVA-CT

C3-Bennie-PSVA-CT_C3-Bennie-PSVA-CT is a research dog from the Hayward2016 cohort. They weren't given a breed label - they're one of the dogs that helps the atlas understand what falls between breeds.

See C3-Bennie-PSVA-CT_C3-Bennie-PSVA-CT in the atlas
About C3-Bennie-PSVA-CT_C3-Bennie-PSVA-CT
  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
C3-Bennie-PSVA-CT_C3-Bennie-PSVA-CT's nearest neighbors

The five dogs in the atlas whose genomes sit closest to C3-Bennie-PSVA-CT_C3-Bennie-PSVA-CT's. Click any of them to keep exploring.

  1. C3-Bennie-Batemen-CT_C3-Bennie-Batemen-CT Cairn Terrier 1.41
  2. G5-Reddi-Control-CT_G5-Reddi-Control-CT 20.05
  3. G5-Reddi-Batement-CT_G5-Reddi-Batement-CT Cairn Terrier 20.19
  4. Spencer-CT-CONTROL_Spencer-CT-CONTROL 27.62
  5. Spencer-Moore-CT_Spencer-Moore-CT Cairn Terrier 27.64
C3-Bennie-PSVA-CT_C3-Bennie-PSVA-CT's breed

C3-Bennie-PSVA-CT_C3-Bennie-PSVA-CT's genome decomposes mostly into Cairn Terrier, with additional weight on Labrador Retriever, and Golden Retriever.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Cairn Terrier 88%
  2. Labrador Retriever 7%
  3. Golden Retriever 6%
Source

From the CanVAS (Hayward2016 cohort) .

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 A/A
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 T/T
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 G/G
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.250
y 2.030
z -6.181
Top-3 principal components by |z|

The 3 PCs on which C3-Bennie-PSVA-CT_C3-Bennie-PSVA-CT scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC17 z = -7.53
  • chr3:41,588,774 loading 0.0279
  • chr8:37,723,192 loading 0.0277
  • chr3:82,224,281 loading 0.0271
PC18 z = -4.64
  • chr29:17,473,726 loading 0.0315
  • chr15:28,241,304 loading 0.0312
  • chr15:31,725,606 loading 0.0272
PC236 z = -3.55
  • chr20:38,047,521 loading 0.0380
  • chr20:38,715,188 loading -0.0374
  • chr20:38,805,558 loading -0.0370
Ancestry reconstruction error: 0.41
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