Skip to main content
snıff
CanVAS Chen · Founder
Cosmic medallion portrait of C_TMf_C_TMf13, a Tibetan Mastiff
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

C_TMf_C_TMf13

C_TMf_C_TMf13 is a Tibetan Mastiff from the Chen research cohort. One of 14,478 dogs who built the atlas.

See C_TMf_C_TMf13 in the atlas
About C_TMf_C_TMf13

C_TMf_C_TMf13 sits near the center of the Tibetan Mastiff cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
C_TMf_C_TMf13's nearest neighbors

The five dogs in the atlas whose genomes sit closest to C_TMf_C_TMf13's. Click any of them to keep exploring.

  1. C_TMf_C_TMf3 Tibetan Mastiff 16.57
  2. C_TMf_C_TMf4 Tibetan Mastiff 16.71
  3. C_TMf_C_TMf1 Tibetan Mastiff 17.25
  4. TIBM_China_TIBM_25314 Tibetan Mastiff 17.31
  5. TIBM_China_TIBM_25311 Tibetan Mastiff 17.41
C_TMf_C_TMf13's breed

C_TMf_C_TMf13 sits in the Tibetan Mastiff cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Tibetan Mastiff 84%
  2. Golden Retriever 10%
  3. Labrador Retriever 6%
Source

From the CanVAS (Chen cohort) . Breed-page reference: Tibetan Mastiff.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL A/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 G/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.214
y 4.686
z 0.819
PCA-256 distance from breed centroid
26.32
Outlier percentile in breed
17
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which C_TMf_C_TMf13 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC11 z = 3.23
  • chr6:60,987,558 loading 0.0302
  • chr18:25,790,852 loading 0.0293
  • chr14:14,074,192 loading -0.0293
PC227 z = 2.31
  • chr27:43,803,988 loading 0.0373
  • chr12:19,514,576 loading 0.0344
  • chr20:11,758,428 loading -0.0328
PC119 z = -2.14
  • chr24:2,576,794 loading 0.0370
  • chr6:3,625,190 loading 0.0350
  • chr6:3,210,008 loading -0.0323
Ancestry reconstruction error: 0.41
Back to the Atlas →