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CanVAS JenkinsWGS · Founder
Cosmic medallion portrait of CHC_25620_CHC_25620, a Chinese Crested
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

CHC_25620_CHC_25620

CHC_25620_CHC_25620 is a Chinese Crested from the JenkinsWGS research cohort. One of 14,478 dogs who built the atlas.

See CHC_25620_CHC_25620 in the atlas
About CHC_25620_CHC_25620

CHC_25620_CHC_25620 sits near the center of the Chinese Crested cluster - genetically very typical for the breed.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
CHC_25620_CHC_25620's nearest neighbors

The five dogs in the atlas whose genomes sit closest to CHC_25620_CHC_25620's. Click any of them to keep exploring.

  1. CHC_32205_CHC_32205 Chinese Crested 17.34
  2. PFZ25D09_PFZ25D09 Chinese Crested 20.78
  3. PFZ5B12_PFZ5B12 Chinese Crested 20.94
  4. PFZ4D01_PFZ4D01 Chinese Crested 20.96
  5. PFZ5F09_PFZ5F09 Chinese Crested 21.30
CHC_25620_CHC_25620's breed

CHC_25620_CHC_25620 sits in the Chinese Crested cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Chinese Crested 83%
  2. Golden Retriever 17%
Source

From the CanVAS (JenkinsWGS cohort) . Breed-page reference: Chinese Crested.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 A/A
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/T
KRT71 C/C
MC1R C/C
Ear set
MSRB3 G/G
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 14.349
y 14.196
z 0.982
PCA-256 distance from breed centroid
38.64
Outlier percentile in breed
12
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which CHC_25620_CHC_25620 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC145 z = 5.51
  • chr19:19,197,831 loading 0.0370
  • chr1:99,774,502 loading -0.0342
  • chr4:60,708,893 loading 0.0329
PC167 z = 5.32
  • chr6:3,625,190 loading 0.0407
  • chr6:3,210,008 loading -0.0395
  • chr6:3,012,938 loading -0.0395
PC129 z = -5.31
  • chr9:12,031,144 loading 0.0367
  • chr13:1,840,654 loading -0.0344
  • chr9:14,628,871 loading -0.0343
Ancestry reconstruction error: 0.54
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