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CanVAS Momozawa · Founder
Cosmic medallion portrait of cHD11_168_cHD11_168, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

cHD11_168_cHD11_168

cHD11_168_cHD11_168 is a Labrador Retriever from the Momozawa research cohort. One of 14,478 dogs who built the atlas.

See cHD11_168_cHD11_168 in the atlas
About cHD11_168_cHD11_168

cHD11_168_cHD11_168 sits at the edge of the Labrador Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Carrier of the RSPO2 wire-coat variant (single copy).
cHD11_168_cHD11_168's nearest neighbors

The five dogs in the atlas whose genomes sit closest to cHD11_168_cHD11_168's. Click any of them to keep exploring.

  1. cHD11_171_cHD11_171 Labrador Retriever 24.07
  2. PFZ4B06_PFZ4B06 Labrador Retriever 24.80
  3. cHD10_547_cHD10_547 Labrador Or Golden Retriever 24.81
  4. cHD10_558_cHD10_558 Labrador Or Golden Retriever 24.99
  5. cHD11_181_cHD11_181 Labrador Retriever 25.18
cHD11_168_cHD11_168's breed

cHD11_168_cHD11_168 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 78%
  2. Golden Retriever 22%
Source

From the CanVAS (Momozawa cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 T/T
Coat
RSPO2 C/T
FGF5 T/C
KRT71 T/T
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.428
y 0.152
z 8.813
PCA-256 distance from breed centroid
63.33
Outlier percentile in breed
72
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which cHD11_168_cHD11_168 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC139 z = 2.88
  • chr11:59,916,847 loading 0.0380
  • chr1:13,688,590 loading -0.0336
  • chr9:44,269,754 loading 0.0311
PC3 z = -2.81
  • chr6:50,750,182 loading 0.0295
  • chr6:65,585,567 loading 0.0275
  • chr1:14,618,344 loading 0.0264
PC20 z = 2.61
  • chr29:37,511,112 loading 0.0311
  • chr15:28,326,342 loading -0.0273
  • chr35:8,740,750 loading 0.0271
Ancestry reconstruction error: 0.89
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